{"id":2957,"date":"2026-03-01T09:50:54","date_gmt":"2026-03-01T01:50:54","guid":{"rendered":"http:\/\/www.majunpeng.com\/?p=2957"},"modified":"2026-03-01T11:21:40","modified_gmt":"2026-03-01T03:21:40","slug":"mm2-plus%ef%bc%9a%e5%8a%a0%e9%80%9f%e7%89%88minimap2%ef%bc%8c%e5%9f%ba%e5%9b%a0%e7%bb%84%e6%af%94%e5%af%b9%e9%80%9f%e5%ba%a6%e5%a4%a7%e5%b9%85%e6%8f%90%e5%8d%87","status":"publish","type":"post","link":"http:\/\/www.majunpeng.com\/index.php\/2026\/03\/01\/mm2-plus%ef%bc%9a%e5%8a%a0%e9%80%9f%e7%89%88minimap2%ef%bc%8c%e5%9f%ba%e5%9b%a0%e7%bb%84%e6%af%94%e5%af%b9%e9%80%9f%e5%ba%a6%e5%a4%a7%e5%b9%85%e6%8f%90%e5%8d%87\/","title":{"rendered":"mm2-plus\uff1a\u52a0\u901f\u7248Minimap2\uff0c\u57fa\u56e0\u7ec4\u6bd4\u5bf9\u901f\u5ea6\u5927\u5e45\u63d0\u5347"},"content":{"rendered":"\t\t<div data-elementor-type=\"wp-post\" data-elementor-id=\"2957\" class=\"elementor elementor-2957\" data-elementor-post-type=\"post\">\n\t\t\t\t<div class=\"elementor-element elementor-element-95182b7 e-flex e-con-boxed e-con e-parent\" data-id=\"95182b7\" data-element_type=\"container\" data-e-type=\"container\">\n\t\t\t\t\t<div class=\"e-con-inner\">\n\t\t\t\t<div class=\"elementor-element elementor-element-bec628e elementor-widget elementor-widget-heading\" data-id=\"bec628e\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\">\u5f15\u8a00<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-9a2eeb1 elementor-widget elementor-widget-text-editor\" data-id=\"9a2eeb1\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p data-start=\"19\" data-end=\"189\"><strong data-start=\"19\" data-end=\"31\">Minimap2<\/strong> \u662f\u76ee\u524d\u5e7f\u6cdb\u5e94\u7528\u4e8e\u57fa\u56e0\u7ec4\u6bd4\u5bf9\u9886\u57df\u7684\u4e00\u4e2a\u9ad8\u6548\u5de5\u5177\uff0c\u7279\u522b\u9002\u7528\u4e8e\u957f\u8bfb\u957f\u6570\u636e\u7684\u6bd4\u5bf9\u4efb\u52a1\u3002\u51ed\u501f\u5176\u51fa\u8272\u7684\u6027\u80fd\uff0cMinimap2\u5df2\u6210\u4e3a\u591a\u79cd\u57fa\u56e0\u7ec4\u5b66\u548c\u8f6c\u5f55\u7ec4\u5b66\u7814\u7a76\u4e2d\u7684\u6807\u51c6\u5de5\u5177\u3002\u7136\u800c\uff0c\u5728\u5904\u7406\u5927\u89c4\u6a21\u57fa\u56e0\u7ec4\u6570\u636e\u65f6\uff0cMinimap2\u7684\u6bd4\u5bf9\u901f\u5ea6\u5f80\u5f80\u6210\u4e3a\u74f6\u9888\uff0c\u5c24\u5176\u662f\u5728\u9ad8\u901a\u91cf\u6570\u636e\u91cf\u6fc0\u589e\u7684\u60c5\u51b5\u4e0b\uff0c\u5904\u7406\u65f6\u95f4\u53ef\u80fd\u4f1a\u53d8\u5f97\u975e\u5e38\u7f13\u6162\uff0c\u4ece\u800c\u5f71\u54cd\u6574\u4f53\u5de5\u4f5c\u6548\u7387\u3002<\/p><p data-start=\"191\" data-end=\"344\">\u4e3a\u4e86\u5e94\u5bf9\u8fd9\u4e00\u6311\u6218\uff0c<strong>mm2-plus<\/strong>\u5e94\u8fd0\u800c\u751f\u3002\u4f5c\u4e3aMinimap2\u7684\u52a0\u901f\u7248\uff0c<strong>mm2-plus<\/strong>\u901a\u8fc7\u4f18\u5316\u7b97\u6cd5\u548c\u8ba1\u7b97\u6d41\u7a0b\uff0c\u663e\u8457\u63d0\u9ad8\u4e86\u6bd4\u5bf9\u901f\u5ea6\uff0c\u540c\u65f6\u4fdd\u6301\u4e86\u9ad8\u7cbe\u5ea6\u7684\u6bd4\u5bf9\u7ed3\u679c\u3002\u65e0\u8bba\u662f\u5927\u89c4\u6a21\u57fa\u56e0\u7ec4\u6bd4\u5bf9\uff0c\u8fd8\u662f\u9ad8\u590d\u6742\u5ea6\u7684\u6d4b\u5e8f\u6570\u636e\u5904\u7406\uff0c<strong>mm2-plus<\/strong>\u90fd\u80fd\u4e3a\u7528\u6237\u63d0\u4f9b\u66f4\u52a0\u9ad8\u6548\u3001\u4fbf\u6377\u7684\u89e3\u51b3\u65b9\u6848\uff0c\u662f\u57fa\u56e0\u7ec4\u6bd4\u5bf9\u4efb\u52a1\u7684\u7406\u60f3\u9009\u62e9\u3002<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-aae7f9d elementor-widget elementor-widget-heading\" data-id=\"aae7f9d\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\">mm2-plus<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-d32d72b elementor-widget elementor-widget-text-editor\" data-id=\"d32d72b\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>mm2-plus\u4f5c\u4e3aminimap2\u7684\u52a0\u901f\u7248\uff0c\u6bd4\u5bf9\u901f\u5ea6\u63d0\u5347\u7684\u540c\u65f6\uff0c\u4e5f\u4fdd\u8bc1\u6bd4\u5bf9\u7ed3\u679c\u548cminimap2\u57fa\u672c\u4e00\u6837\uff0c\u56e0\u6b64\u57fa\u672c\u53ef\u4ee5\u7b97\u662fminimap2\u7684\u4e0a\u4f4d\u66ff\u4ee3\u3002\u6587\u4ef6\u4e2d\u8bf4\u660e\uff0cmm2plus\u7684\u52a0\u901f\u6548\u7387\u6839\u636e\u57fa\u56e0\u7ec4\u7684\u590d\u6742\u7a0b\u5ea6\u4e0d\u540c\uff0c\u53ef\u4ee5\u5b9e\u73b01.6-7.2\u500d\u7684\u52a0\u901f\u6548\u7387\u3002<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-2e14d50 elementor-widget elementor-widget-image\" data-id=\"2e14d50\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"image.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<img fetchpriority=\"high\" decoding=\"async\" width=\"1024\" height=\"784\" src=\"http:\/\/www.majunpeng.com\/wp-content\/uploads\/2026\/03\/perf_mm2plus-1024x784.jpg\" class=\"attachment-large size-large wp-image-2960\" alt=\"\" srcset=\"http:\/\/www.majunpeng.com\/wp-content\/uploads\/2026\/03\/perf_mm2plus-1024x784.jpg 1024w, http:\/\/www.majunpeng.com\/wp-content\/uploads\/2026\/03\/perf_mm2plus-300x230.jpg 300w, http:\/\/www.majunpeng.com\/wp-content\/uploads\/2026\/03\/perf_mm2plus-768x588.jpg 768w, http:\/\/www.majunpeng.com\/wp-content\/uploads\/2026\/03\/perf_mm2plus-1536x1175.jpg 1536w, http:\/\/www.majunpeng.com\/wp-content\/uploads\/2026\/03\/perf_mm2plus-2048x1567.jpg 2048w\" sizes=\"(max-width: 1024px) 100vw, 1024px\" \/>\t\t\t\t\t\t\t\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-08d0274 elementor-widget elementor-widget-heading\" data-id=\"08d0274\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h3 class=\"elementor-heading-title elementor-size-default\">\u5b89\u88c5<\/h3>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-28f3231 elementor-widget elementor-widget-code-highlight\" data-id=\"28f3231\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"code-highlight.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"prismjs-okaidia copy-to-clipboard \">\n\t\t\t<pre data-line=\"\" class=\"highlight-height language-bash line-numbers\">\n\t\t\t\t<code readonly=\"true\" class=\"language-bash\">\n\t\t\t\t\t<xmp>mamba install bioconda::mm2plus<\/xmp>\n\t\t\t\t<\/code>\n\t\t\t<\/pre>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-50b9d97 elementor-widget elementor-widget-heading\" data-id=\"50b9d97\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h3 class=\"elementor-heading-title elementor-size-default\">\u6bd4\u5bf9<\/h3>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-9d8a761 elementor-widget elementor-widget-text-editor\" data-id=\"9d8a761\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>mm2-plus\u7684\u547d\u4ee4\u548cminimap2\u662f\u5b8c\u5168\u4e00\u6837\u7684\uff0c\u53ea\u9700\u8981\u628aminimap2\u66ff\u6362\u4e3amm2plus\u5373\u53ef\u3002<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-b5cc976 elementor-widget elementor-widget-code-highlight\" data-id=\"b5cc976\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"code-highlight.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"prismjs-okaidia  \">\n\t\t\t<pre data-line=\"\" class=\"highlight-height language-bash line-numbers\">\n\t\t\t\t<code readonly=\"true\" class=\"language-bash\">\n\t\t\t\t\t<xmp># minimap2\nminimap2 -ax asm5 -t 8 --eqx Prunus_pedunculata_Chr_g4.fasta Prunus_pedunculata_Chr_g5.fasta > minimap2.paf\n# mm2plus\nmm2plus -ax asm5 -t 20 --eqx Prunus_pedunculata_Chr_g4.fasta Prunus_pedunculata_Chr_g5.fasta > mm2plus.paf<\/xmp>\n\t\t\t\t<\/code>\n\t\t\t<\/pre>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-78bf464 elementor-widget elementor-widget-text-editor\" data-id=\"78bf464\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>\u6211\u7528\u6765\u6d4b\u8bd5\u7684\u57fa\u56e0\u7ec4\u5927\u5c0f\u662f250M\uff0c\u90fd\u4f7f\u752820\u4e2acpu\u7684\u60c5\u51b5\u4e0b\uff0cminimap2\u7684\u6bd4\u5bf9\u65f6\u95f4\u4e3a6\u520630\u79d2\uff0cmm2plus\u7684\u6bd4\u5bf9\u65f6\u95f4\u4e3a5\u520616\u79d2\uff0c\u63d0\u5347\u5927\u7ea620%\u3002<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-9382cbb elementor-widget-divider--view-line elementor-widget elementor-widget-divider\" data-id=\"9382cbb\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"divider.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"elementor-divider\">\n\t\t\t<span class=\"elementor-divider-separator\">\n\t\t\t\t\t\t<\/span>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-f9b538a elementor-widget elementor-widget-text-editor\" data-id=\"f9b538a\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>\u63a5\u4e0b\u6765\u4f7f\u7528\u4e00\u4e2a1.5G\u7684\u690d\u7269\u57fa\u56e0\u7ec4\u540c\u65f6\u4f7f\u7528minimap2\u548cmm2plus\u8fdb\u884c\u5168\u57fa\u56e0\u7ec4\u6bd4\u5bf9\uff0c\u6d4b\u8bd5\u52a0\u901f\u6548\u679c<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-8ea531f elementor-widget elementor-widget-code-highlight\" data-id=\"8ea531f\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"code-highlight.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"prismjs-okaidia  \">\n\t\t\t<pre data-line=\"\" class=\"highlight-height language-bash line-numbers\">\n\t\t\t\t<code readonly=\"true\" class=\"language-bash\">\n\t\t\t\t\t<xmp># minimap2\nminimap2 -ax asm5 -t 48 --eqx Prunus_pedunculata_Chr_48.fasta Prunus_pedunculata_Chr_48.fasta > minimap2.paf\n# mm2plus\nmm2plus -ax asm5 -t 48 --eqx Prunus_pedunculata_Chr_48.fasta Prunus_pedunculata_Chr_48.fasta > mm2plus.paf<\/xmp>\n\t\t\t\t<\/code>\n\t\t\t<\/pre>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-37eda11 elementor-widget elementor-widget-text-editor\" data-id=\"37eda11\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>minimap2\u7684\u8fd0\u884c\u65f6\u95f4\u4e3a14\u520616\u79d2\uff0cmm2plus\u7684\u8fd0\u884c\u65f6\u95f4\u4e3a8\u520636\u79d2\uff0c\u901f\u5ea6\u63d0\u5347\u63a5\u8fd11\u500d\u3002<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-a38c30c elementor-widget-divider--view-line elementor-widget elementor-widget-divider\" data-id=\"a38c30c\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"divider.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"elementor-divider\">\n\t\t\t<span class=\"elementor-divider-separator\">\n\t\t\t\t\t\t<\/span>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-29a8951 elementor-widget elementor-widget-text-editor\" data-id=\"29a8951\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>\u6700\u540e\u4f7f\u7528\u4e00\u4e2a\u57fa\u56e0\u7ec4\u5927\u5c0f\u4e3a3G\u7684\u57fa\u56e0\u7ec4\u6765\u8fdb\u884c\u6700\u540e\u7684\u6d4b\u8bd5<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-e34e2ea elementor-widget elementor-widget-code-highlight\" data-id=\"e34e2ea\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"code-highlight.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t<div class=\"prismjs-okaidia  \">\n\t\t\t<pre data-line=\"\" class=\"highlight-height language-bash line-numbers\">\n\t\t\t\t<code readonly=\"true\" class=\"language-bash\">\n\t\t\t\t\t<xmp># minimap2\nminimap2 -ax asm5 -t 48 --eqx Chrysanthemum_rhombifolium_Hap_A.fasta Chrysanthemum_rhombifolium_Hap_A.fasta > minimap2.paf\n# mm2plus\nmm2plus -ax asm5 -t 48 --eqx Chrysanthemum_rhombifolium_Hap_A.fasta Chrysanthemum_rhombifolium_Hap_A.fasta > mm2plus.paf<\/xmp>\n\t\t\t\t<\/code>\n\t\t\t<\/pre>\n\t\t<\/div>\n\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-cc25332 elementor-widget elementor-widget-text-editor\" data-id=\"cc25332\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>\u8fd9\u65f6\u5019\u51fa\u73b0\u4e86\u95ee\u9898\uff0cminimap2\u53ef\u4ee5\u6b63\u5e38\u8fd0\u884c\uff0c\u5355\u6570mm2plus\u51fa\u73b0\u4e86(core dumped)\u9519\u8bef\uff0c\u5e94\u8be5\u662f\u5185\u5b58\u76f4\u63a5\u7206\u4e86\u3002<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-c40b9b6 elementor-widget elementor-widget-heading\" data-id=\"c40b9b6\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"heading.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t<h2 class=\"elementor-heading-title elementor-size-default\">\u7ed3\u8bed<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<div class=\"elementor-element elementor-element-80a71ed elementor-widget elementor-widget-text-editor\" data-id=\"80a71ed\" data-element_type=\"widget\" data-e-type=\"widget\" data-widget_type=\"text-editor.default\">\n\t\t\t\t<div class=\"elementor-widget-container\">\n\t\t\t\t\t\t\t\t\t<p>\u603b\u4f53\u6765\u770bmm2plus\u8fd8\u662f\u8db3\u591f\u4f18\u79c0\u7684\uff0c\u53ef\u4ee5\u5927\u5e45\u5ea6\u63d0\u5347minimap2\u7b97\u6cd5\u7684\u6bd4\u5bf9\u901f\u5ea6\uff0c\u4f46\u662f\u63d0\u5347\u901f\u5ea6\u7684\u540c\u65f6\u4e5f\u9700\u8981\u6d88\u8017\u66f4\u591a\u7684\u5185\u5b58\uff0c\u56e0\u6b64\u5bf9mm2plus\u5bf9\u5185\u5b58\u7684\u9700\u6c42\u66f4\u9ad8\u3002<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"<p>\u5f15\u8a00 Minimap2 \u662f\u76ee\u524d\u5e7f\u6cdb\u5e94\u7528\u4e8e\u57fa\u56e0\u7ec4\u6bd4\u5bf9\u9886\u57df\u7684\u4e00\u4e2a\u9ad8\u6548\u5de5\u5177\uff0c\u7279\u522b\u9002\u7528\u4e8e\u957f\u8bfb\u957f\u6570\u636e\u7684\u6bd4\u5bf9\u4efb\u52a1\u3002\u51ed\u501f\u5176\u51fa &#8230; <a 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